Archive for the ‘Database release’ Category

Release#31 updates in Gramene Genetic Diversity

Release #31 of Gramene brought new data sets and features in the Genetic Diversity module. Gramene Diversity now features five large-scale SNP genotype data sets generated by recent re-sequncing projects in rice, maize, and Arabidopsis from the OryzaSNP, Panzea, Arabidopsis 2010 and 1001 Genomes projects. Storage of these several hundred million data points is achieved [...]

Gramene release #31

We are pleased to announce the 31st release of the Gramene database which includes updates to our genomes, diversity, maps, pathways, and web services. Our genome browser has been updated to Ensembl version 57 and hosts fourteen genomes with new annotations, Fgenesh gene predictions, gene trees, whole genome alignments, and synteny views. The [...]

Gramene Interim Release 30a

Today Gramene announces an interim release (Build 30a) with the following updates:
Data

Updated variation database for Arabidopsis thaliana with indels from Mott (Wellcome Trust Centre for HumanGenetics) and Kover (University of Bath); and updated Affymetrix data from Nordborg (see this page for information)
Updated variation database for Vitis vinifera to include read coverage data
Updated BioMart
Software migrated to [...]

PlantGeneWiki Beta release

The Gramene database project team is happy to announce beta release of theĀ  PlantGeneWiki. It is designed as an online community portal on plant genes and their annotations. Our goal for PlantGeneWiki is to generate community curated/annotated pages where the researchers can browse, search, read and manage the content by editing. Yes, the biggest advantage [...]

Plant Ontology Database #0409 Release

The Plant Ontology Consortium (POC) is excited to announce the release #0409 (April 2009) of the Plant Ontology Database.
In this release, we bring you 26,625 gene annotations from TAIR, Gramene, SGN and MaizeGDB; 8,558 QTL annotations from Gramene; and 9,832 germplasm associations from SGN, MaizeGDB and NASC.
Many new annotations were added including 16,016 gene annotations [...]