Archive for December 2009

Job opening at UMass Amherst

The Department of Biochemistry and Molecular Biology at UMass Amherst announces a faculty search for a plant biochemist/ molecular biologist (tenure track Assistant Professor). They are particularly interested in recruiting a plant biochemist who will complement the research strengths of the department and who will contribute to campus initiatives in [...]

TED talk by Carey Fowler on Crop Genetic Diversity

Enjoy

iPlant Undergraduate Summer Research Opportunity

Undergraduates interested in applying their quantitative science or biology background to problems in plant biology are invited to a 2010 summer research opportunity. The iPlant Collaborative is supporting an Interdisciplinary Computational Thinking and Plant Biology Research Program for Undergraduates (Interdisciplinary UBRP-CT). This is a 12 week paid summer research experience (roughly $300/week) with many [...]

RosBREED BIMS post-doc position available

RosBREED project is seeking a cadre of tomorrow’s leaders to join their team on an exciting new “science to the marketplace” federally funded project. “RosBREED: Enabling Marker-Assisted Breeding in Rosaceae” is a four-year trans-disciplinary project focused on rosaceous crops (apple, cherry, peach, and strawberry) involving 12 U.S. research institutions, international collaborators, and private sector participants. [...]

CASHX annotation pipeline

Fahlgren, et al. recently reported an annotation pipeline called  Cache ASsisted Hash Search with Xor logic (CASHX) in the journal RNA (PubMed ID 19307293). The pipeline can map, quantify and manage large quantities of sequence data. The sequence alignments can be done using any size of DNA sequence data for both query sequences and database. [...]

QTL Load File Documentation

In order to facilitate the community curation of Quantitative Trait Loci (QTL), the Gramene team has published a proposed QTL load file format and instructions for submitting new QTL to Gramene for inclusion in our QTL database and comparative maps. If you have any questions or comments about this proposal, please write gramene@gramene.org.