Collaborator: DynaMITE Rice

Project's URL:

The project has produced data for active TE insertions in the HEG4 and EG4 strains of Oryza sativa japonica relative to nipponbare (NB).

  • map of TE insertions in HEG4 and EG4 relative to NB
  • SNP positions among all these strains
  • phenotype panels for NB x HEG4 RILs
  • RIL genotypes
  • RNA-Seq Expression for genes under stress conditions and the genetic (TE and SNP) variation in the RILs as part of the QTL project to map which insertions are associated with phenotypic difference
  • Salient aspects of the QTL results (genotypes, phenotypes, LOD scores, etc)