Collaborator: MaizeGDB

The MaizeGDB team.

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Principal Investigator

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Institute

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Data types

  • Type of the Data sets submitted or expected from this group (sequences, microarray, RNA-Seq, Diversity etc.): MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.
  • Short description of data: species, cultivar or strain, treatment, developmental stage, tissue types: Many diverse types of data can be found at MaizeGDB, such as: DNA sequence, Genome assemblies, Genome Browser, Genetic maps, Cytogenetic maps, Hapmaps, Mapping panels, Loci, Gene Models, Mutations, Alleles. Stocks, QTLs, SNPs, BACs, Markers, Probes, Gene Products, Pathway data, microarray data, expression atlas, RNAseq, microRNAs, insertion elements and stocks, images of mutants, images of gel patterns, references, people, organizations, tutorials, curated list of maize projects and resources, and community information such as Maize Meeting sign ups.
  • Link to data sets: Too many- just link to the homepage: MaizeGDB.orghttp://MaizeGDB.org
  • Cross-reference(if these data is submitted to other public databases). Many of these data are from other websites, and these links can be found on the releavent pages at MaizeGBD.
  • Publication(s):

Marcela K. Monaco, Taner Z. Sen, Palitha D. Dharmawardhana, Liya Ren, Mary Schaeffer, Sushma Naithani, Vindhya Amarasinghe, Jim Thomason, Lisa Harper, Jack Gardiner, Ethalinda K.S. Cannon, Carolyn J. Lawrence, Doreen Ware, and Pankaj Jaiswal. Maize Metabolic Network Construction and Transcriptome Analysis. doi: 10.3835/plantgenome2012.09. 0025; Posted online 23 Jan. 2013 Full Texthttps://www.crops.org/files/publications/tpg/tpg12-09-0025.pdf

Schaeffer ML, Harper LC, Gardiner JM, Andorf CM, Campbell DA, Cannon EK, Sen TZ, Lawrence CJ. (2011) MaizeGDB: curation and outreach go hand-in-hand. Database 2011:bar022. Full Texthttp://database.oxfordjournals.org/content/2011/bar022.long

Harper LC, Schaeffer ML, Thistle J, Gardiner JM, Andorf CM, Campbell DA, Cannon EK, Braun BL, Birkett SM, Lawrence CJ, Sen TZ. (2011) The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video. Database 2011:bar016. Full Texthttp://database.oxfordjournals.org/content/2011/bar016.long

Sen, TZ, Harper, LC, Schaeffer, ML, Andorf, CM, Seigfried, T., Campbell, DA, Lawrence, CJ. (2010) Choosing a genome browser for a Model Organism Database: surveying the Maize community. Database 2010:baq007 Full Texthttp://database.oxfordjournals.org/cgi/content/full/2010/0/baq007?maxtoshow=&hits=10&RESULTFORMAT=&fulltext=taner&searchid=1&FIRSTINDEX=0&resourcetype=HWCIT

Andorf, CM, Lawrence, CJ, Harper, LC, Schaeffer, ML, Campbell, DA, Sen, TZ. (2010) The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic mapsBioinformatics. 2010 26: 434-436. Full Texthttp://bioinformatics.oxfordjournals.org/cgi/content/full/btp556?ijkey=9RINrPlHUOt1MgB&keytype=ref

Sen, TZ, Andorf, CM, Schaeffer, ML, Harper, LC, Sparks, ME, Duvick, J, Brendel, VP, Cannon, E, Campbell, DA, Lawrence, CJ. (2009) MaizeGDB becomes 'sequence-centric' Database. 2009:Vol. 2009:bap020. Full Texthttp://database.oxfordjournals.org/cgi/content/full/2009/0/bap020?ijkey=NtoVnRZ51irh47m&keytype=ref

Lawrence, CJ, Harper, LC, Schaeffer, ML, Sen, TZ, Seigfried, TE, Campbell, DA. (2008) MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research. Int J Plant Genomics. 2008:496957. Full Texthttp://www.hindawi.com/journals/ijpg/2008/496957/

Lawrence, CJ, Schaeffer, ML, Seigfried, TE, Campbell, DA, and Harper, LC. (2007) MaizeGDB's new data types, resources and activities. Nucleic Acids Research 35:D895-900. Full Texthttp://nar.oxfordjournals.org/cgi/content/full/35/suppl_1/D895

Lawrence, CJ, Seigfried, TE, and Brendel, V. (2005) The Maize Genetics and Genomics Database. The community resource for access to diverse maize data. Plant Physiology 138:55-58. Full Texthttp://www.plantphysiol.org/cgi/content/full/138/1/55

Lawrence, CJ, Dong, Q, Polacco, ML, Seigfried, TE, and Brendel, V. (2004) MaizeGDB, the community database for maize genetics and genomics. Nucleic Acids Research 32:D393-D397. Full Texthttp://nar.oupjournals.org/cgi/content/full/32/suppl_1/D393 Collaborator Pages for internal use (these can remain in google)

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