Submitted by jpreece on Mon, 08/17/2015 - 20:39
Tuesday, August 18, 2015 11:00:00 AM PDT - 11:30:00 AM PDT
This session will showcase the pathway analysis tools provided with the latest version of the Plant Reactome web site and database (http://plantreactome.gramene.org). Learn how to upload and visualize genomic, transcriptomic, and metabolic data on pathway diagrams, extract related statistics, and compare pathway-level homology between rice and other species.
Submitted by jpreece on Fri, 08/01/2014 - 14:34
Plant Reactome now provides projections for eighteen plant species (nine monocots and nine dicots).
Using curated rice pathways as a reference, Plant Reactome predicts pathways in other plant species on the basis of Compara orthology projections.
Submitted by jpreece on Mon, 06/02/2014 - 19:58
Plant Reactome now offers a tab-delimited file containing curated gene product identifiers in rice, grouped by pathway. This data includes IRGSP (RAP/Os), MSU (LOC), and Uniprot identifiers.
Get the data here.
Submitted by jpreece on Fri, 05/23/2014 - 18:52
We recently undertook an effort to project our manually curated Plant Reactome Oryza sativa (rice) pathway data onto Zea mays (maize) and Arabidopsis thaliana, and we were curious to compare gene-level projection results derived using both Compara and Inparanoid methodologies.
