Gramene database build 40 released

Submitted by marcela.karey on Thu, 01/09/2014 - 17:25

The Gramene Team is pleased to announce its release #40.

You'll notice we have a new look --- You can find all the old stuff at Gramene's Archive

In collaboration with Ensembl Plants we are providing in this release:

  1. Updated gene models for Oryza sativa japonica from RAP-DB.
  2. Gene models for Triticum aestivum (bread wheat) chromosome survey sequences from MIPS.
  3. MaizeCyc updated to version 2.2 including new GO associations.
  1. DNA-DNA alignments between bread wheat and Oryza sativa, as well as Brachypodium distachyon.
  2. DNA-DNA alignments between Hordeum vulgare (barley) and the wild wheat progenitors (Triticum urartu and Aegilops tauschii).
  3. Additional RNA-Seq data aligned to bread wheat as well as to its wild progenitors.
  4. Wheat UniGene clusters sequences aligned to bread wheat as well as to its wild progenitors.
  5. Updated gene-trees to include bread wheat gene models.
  6. Updated (TREP) repeat analysis for wheat and barley genomes.
  7. Updated functional domain (InterPro) and ontology (InterPro2GO) annotation.
  8. Updated BioMart databases.
  9. Gramene genome browser, database schema and API updated to Ensembl version 74.

A complete description of the contents of this new release is available in our release notes.

Please let us know if you have questions or suggestions to improve Gramene's new site.

We value and welcome your Feedback!!!

The Gramene Team