Gramene at Plant & Animal Genome 2020

The Plant and Animal Genome (PAG) XXVIII conference will kick off this coming Saturday, January 11th, 2020, in San Diego, CA.  Come meet Gramene staff and get the latest updates to Gramene’s comparative genomics and pathways visualization and mining tools to aid your research on plant models and crops!  At PAG 2020, we will be announcing Gramene's public release #62 containing updates to its Genome section, Pathway portal Plant Reactome, and infrastructure. The genome portal hosts 67 plant genomes with six new species and the Plant Reactome hosts pathways for 97 species.

Meet with Gramene staff -Sushma NaithaniPankaj Jaiswal and Doreen Ware- at PAG to explore how Gramene can help in your research. 

Attend the Gramene workshop on Tuesday, January 14, 2018 at 1:30-3:40 pm PST in the California Room, Town & Country. Workshop speakers:

  1. 1:30 PM Doreen Ware (PI Gramene project; USDA ARS / Cold Spring Harbor Laboratory, NY): Introduction to PAG 2020 Gramene Workshop.
  2. 1:45 PM Nancy George (EMBL-EBI, UK): Single Cell RNA-Sequencing in Plants: EMBL-EBI's Resources for Data Submission, Archival and Visualization.
  3. 2:00 PM Zhanguo Xin (USDA-ARS, LUBBOCK, TX): NGS-Enabled Fast Gene Discovery from Sorghum Pedigreed Mutant Library. 
  4. 2:15 PM Shujun Ou (Iowa State University, Ames, IA): Effect of Sequence Depth and Length in Long-Read Assembly of the Maize Inbred NC358.
  5. 2:30 PM Rebecca L. Seipelt-Thiemann (Middle Tennessee State University, Murfreesboro, TN): Investigating the Maize Genome with Undergraduate Researchers.  
  6. 2:45 PM Liya Wang (Cold Spring Harbor Laboratory, NY): Accessing MaizeCode Data from Gramene and Sciapps.
  7. 3:00 PM Andrea Braeutigam (Bielefeld University, Bielefeld, Germany): Gene Regulatory Network Construction Based on Machine Learning Enables Phylogenetic Comparisons in the Monocots.
  8. 3:15 PM Pankaj Jaiswal (Co-PI Gramene project; Oregon State University, Corvallis, OR): Plant Reactome 2020: A Plant Pathway Knowledgebase. 
  9. 3:30 PM Sushma Naithani (Oregon State University, Corvallis, OR): Concluding Remarks.

Visit our Exhibit Booth #631 from Jan 12-14, 2020: We will be happy to meet with users and answer questions. Stop by for one-on-one assistance or just to say hi!

For more information and help, please contact us at Share your thoughts with us!

Additional PAG workshops (where Gramene folks are presenting/organizing):

Friday, January 10
4:00 - 6:00 PM:
 WheatIS EWG annual meeting (Doreen Ware)

Saturday, Jan 11, 2020
1:30 - 3:40 PM; Pacific Salon 6-7 (2nd Floor) 
Genome to Phenome: Next Generation Sensors for Sensing Plants and Environment (Pankaj Jaiswal)

Sunday, Jan 12
8:00 -10:10 AM
Royal Palm Salon 3-4
Systems Biology and Ontologies (Sushma Naithani & Pankaj Jaiswal)

Tuesday, Jan 14
2:23 -2:43 PM: Pacific Salon 3 Moving from a Single Genome to Population-Based References Assemblies of Plants in Corteva Agriscience - "Enriching Lives Through Genomic Innovations(Doreen Ware)
See you at PAG2020!
The Gramene Team