Sushma_Naithani's blog

Biocuration of rice genes and pathways by OSU undergraduates

Plant Reactome is the pathway portal of Gramene knowledgebase.We combine manual biocuration and gene-orthology based automated projections to provide conceptual framework of system-level plant pathway networks for 106 species of photoautotrophs, including models, crops and species of evolutionary interests.

Biocuration of Plant Developmental Processes in the Plant Reactome pathway resource

The advent of functional genomics has changed the scope, scale and speed at which new datasets are being generated and has posed the challenge for its comprehension and effective utilization to advance translational research. Plant Reactome portal of Gramene 


Reproductive meristem phase change in O. sativa

New and updated plant genomes and pathways datasets planned for the Gramene release #63 (July 2020)

We wish and hope that in this difficult time of COVID-19 pandemic, all Gramene database users and their loved ones are doing well and keeping safe.

PAG meeting 2020 notes and a user survey

The recent 2020 Plant and Animal Genome (PAG) Conference, held in Town & Country Resort, San Diego, brought together over 3,000 leading researchers, scientists, software professional, and students working in plant and animal genomics research, over 135 exhibits, 180 workshops, 1,200 posters, over 2,500 abstracts and 7 Plenary talks.


Gramene at Plant & Animal Genome 2020

The Plant and Animal Genome (PAG) XXVIII conference will kick off this coming Saturday, January 11th, 2020, in San Diego, CA.  Come meet Gramene staff and get the latest updates to Gramene’s comparative genomics and pathways visualization and mining tools to aid your research on plant models and crops!  At PAG 2020, we will be announcing Gramene's p

Announcing Gramene Database Release #62

The Gramene is a curated, open-source, integrated data resource for comparative functional genomics in crops and model plant species.

Announcing Gramene release #60: New & updated genomes, pathways and other features

The Gramene Team is pleased to announce its Release #60 with the Genome section providing access to information on 2,162,056 genes and 58 reference plant genomes. 1,891,391 protein-coding genes are organized in 93,194 gene families.

Gramene at PAG 2019 Conference

The Gramene team looks forward to meeting plant researchers at the Plant and Animal Genome XXVII conference from 12th-16th January, 2019. You can meet Gramene folks at: 

Gramene Pathway Curation Jamboree 7th-10th August, 2018



Photo: Left to right in the front row are Sushma Naithani, Justin Preece, Parul Gupta and in the back row are Valerie Fraser, Lillian K Padgitt-Cobb, Kelly Vining, Noor-Al-Bader and Priyanka Garg.

Gramene webinar Feb 27, 2018: Plant Reactome pathway updates and new features

We are very pleased to announce a webinar on 'Plant Reactome pathway updates and new features'.

Date: Tuesday, February 27, 2018

Time: 11:00 AM PST - 11:30 AM PST



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