Gramene Interim Release 30a
Today Gramene announces an interim release (Build 30a) with the following updates:
Data
- Updated variation database for Arabidopsis thaliana with indels from Mott (Wellcome Trust Centre for HumanGenetics) and Kover (University of Bath); and updated Affymetrix data from Nordborg (see this page for information)
- Updated variation database for Vitis vinifera to include read coverage data
- Updated BioMart
- Software migrated to Ensembl 56
Software updates
Ensembl Release 56 re-introduces the following multi-species views:
- Alignments (image), formerly alignsliceview, shows pairwise or multiple alignments from the Ensembl Compara database, highlighting any gaps in the alignment. The display can only show one pairwise alignment at a time. EXAMPLE
- Multi-species view, formerly known as multicontigview, displays pairwise alignments without gaps; multiple pairwise alignments can be configured to create a multiple alignment display. EXAMPLE