Submitted by marcela.karey on Thu, 03/17/2016 - 15:18
In the context of the Maize Genetics Conference 2016, the Gramene Project will be presenting a workshop on Thursday, 17 March 2016 from 3:30 - 4:30 PM EDT in the Daytona Room of the Hyatt Regency Jacksonville Riverfront.
Submitted by marcela.karey on Tue, 02/09/2016 - 17:56
In recent months, the Plant Bioinformatics volume of the Methods in Molecular Biology protocols series edited by Professor David Edwards of the University of Queensland, Australia, was published. This volume included 18 chapters covering various topics of interest to the plant research community and featured bioinformatic resources available for plant researchers. The Gramene Database was featured in one of those chapters.
Submitted by marcela.karey on Mon, 02/08/2016 - 14:36
Release 50 of Gramene is scheduled for March 22, 2016. Our intentions for this release are:
Submitted by Sushma_Naithani on Tue, 02/02/2016 - 17:14
Register to join us online on Tuesday, February 16, 2016, at 2:00 pm EST/11:00 am PST.
Plant Reactome is a freely available resource of curated metabolic, signaling, and regulatory pathways from the reference species rice, and gene homology-based pathway projections for 58 other plants including Arabidopsis, maize, grape, strawberry, tomato, etc. Plant Reactome uses a eukaryotic cell model for pathway visualization, and allows uploading and analysis of omics data.
Submitted by Sushma_Naithani on Wed, 01/20/2016 - 19:04
Submitted by marcela.karey on Sun, 01/10/2016 - 12:13
Come meet the Gramene team and get the latest updates to Gramene’s comparative genomics and pathways visualization/mining tools to aid your research of plant models and crops!
The Gramene workshop will give a broad overview of Gramene’s database resources and use cases demonstrating many specific topics like how to:
Submitted by marcela.karey on Tue, 01/05/2016 - 17:05
The Gramene Team is pleased to announce its release #49. In collaboration with Ensembl Plants we are providing in this release:
Submitted by marcela.karey on Thu, 12/10/2015 - 13:55
Data Mining with Gramene!
The Gramene database (http://www.gramene.org) invites you to a FREE 30-min webinar on How to Extract Plant Genomic Data Using BioMart.
The webinar will demonstrate how to explore data for 39 plant reference genomes in the Gramene and Ensembl Plants databases, including sequence, gene structure and annotations such as protein domains and ontology associations, homologs, genetic and structural variations.
Submitted by Sushma_Naithani on Mon, 12/07/2015 - 16:26
In November 2015 Gramene Webinar, Matt Geniza, (a graduate student, Jaiswal Lab at Oregon State University) presented how to use standalone Perl script and command line protocols for Variant Effect Predictor (VEP) analysis. This option is for advanced users who are familiar with the Unix/Linux command line. Also, users are expected to have a SNP DATA file before proceeding for this exercise.
Submitted by pankaj.jaiswal on Thu, 11/19/2015 - 17:44
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