Submitted by marcela.karey on Thu, 12/10/2015 - 13:55
Data Mining with Gramene!
The Gramene database (http://www.gramene.org) invites you to a FREE 30-min webinar on How to Extract Plant Genomic Data Using BioMart.
The webinar will demonstrate how to explore data for 39 plant reference genomes in the Gramene and Ensembl Plants databases, including sequence, gene structure and annotations such as protein domains and ontology associations, homologs, genetic and structural variations.
Submitted by Sushma_Naithani on Mon, 12/07/2015 - 16:26
In November 2015 Gramene Webinar, Matt Geniza, (a graduate student, Jaiswal Lab at Oregon State University) presented how to use standalone Perl script and command line protocols for Variant Effect Predictor (VEP) analysis. This option is for advanced users who are familiar with the Unix/Linux command line. Also, users are expected to have a SNP DATA file before proceeding for this exercise.
Submitted by pankaj.jaiswal on Thu, 11/19/2015 - 17:44
Submitted by marcela.karey on Fri, 11/13/2015 - 12:37
Click on the link below to view the full schedule for the GARNet/Egenis
workshop on 'Integrating Large Data into Plant Science: From Big Data to
Discovery'.
Detailed schedule as PDF
This will take place in Dartington Hall, Totnes, Devon UK. There are a
limited number of places available for delegates so anyone interested in
attending should contact geraint@garnetcommunity.org.uk with details as
to why this meeting would be beneficial for your research.
Submitted by Sushma_Naithani on Tue, 11/10/2015 - 14:44
Submitted by olson on Thu, 11/05/2015 - 10:55
Genome Informatics was held at Cold Spring Harbor Laboratories from October 28-31. From the CSHL meetings page
Submitted by marcela.karey on Mon, 11/02/2015 - 14:10
The Gramene Team is pleased to announce its release #48. In collaboration with Ensembl Plants we are providing in this release:
New ATLAS gene expression annotations
New pairwise alignment between Solanum tuberosum and S. lycopersicum (build 2.50)
New pairwise alignments between Theobroma cacao and: 1) Arabidopsis thaliana, 2) Oryza sativa, and 3) Vitis vinifera
Submitted by Sushma_Naithani on Tue, 10/20/2015 - 18:49
Image:
Prof. QIFA ZHANG welcoming 13th ISRFG participants (Photo credit : Organizers of 13th ISFRG)
Submitted by marcela.karey on Thu, 10/15/2015 - 15:42
Have a BLAST with Gramene!
The Gramene database invites you to a FREE 30-min webinar on Gramene BLAST.
This webinar will highlight important features of the sequence BLAST tool and demonstrate how to maximize your chances of getting the best BLAST hits. The tool allows aligning query sequences against genomic DNA, cDNAs and translated peptides of 39 plant genomes in Gramene.
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