Submitted by marcela.karey on Tue, 05/12/2015 - 12:24
Gramene Webinar on Rice Data & Resources in the Gramene Database
Fascination of Plants Day is here... Come celebrate it with Gramene!
Tuesday, May 19, 2015 @ 2:00 PM EDT
Learn the benefits of using Gramene to accelerate your research goals. During this webinar, we will demo the use of Gramene's comparative genomics visualization and analysis resources through practical examples of general interest to rice researchers.
Submitted by marcela.karey on Thu, 04/23/2015 - 14:49
The National Science Foundation (NSF) has funded the Planteome Project to develop common reference ontologies and applications for plant biology.
Submitted by marcela.karey on Thu, 04/09/2015 - 15:50
The Gramene Team is pleased to announce its release #45. In collaboration with Ensembl Plants we are providing in this release:
Updated genome assembly and gene set for medicago and the wild rice Oryza meridionalis.
Whole genome alignments between Triticeae genomes using Assembly to Assembly Comparison, ATAC.
Submitted by marcela.karey on Fri, 04/03/2015 - 19:09
Gramene Webinar on Maize data & resources in the Gramene database
Tuesday, April 7, 2015 @ 2:00 PM EDT
Learn the benefits of using Gramene to accelerate your research goals. During this webinar, we will demo the use of Gramene's comparative genomics visualization and analysis resources through practical examples of general interest to maize researchers.
This webinar will highlight the most recent maize data additions to the Gramene website including:
Submitted by marcela.karey on Wed, 03/11/2015 - 15:24
Gramene Webinar on Visualization and Analysis of Gene Family Trees
Tuesday, March 17, 2015 @ 2:00 PM EST
Learn the benefits of using Gramene to accelerate your research goals. Our comparative genomics platform of 39 plant species enables you to:
List orthologs and paralogs, and view these relationships within phylogenetic trees, whole genome alignments, and synteny maps.
Explore and visualize functional annotations, expression, and variation in your favorite genes.
Submitted by pankaj.jaiswal on Wed, 02/25/2015 - 19:10
There is an immediate opening for a software and database developer to work on the NSF funded Planteome project (www.planteome.org). This open-source computational biology, comparative genomics, and bioinformatics project involves the development and maintenance of databases, software and automated data analysis pipelines. The incumbent will have a proven track record of database development in MySQL (with exposure to Solr, noSQL, and/or MongoDB) and experience developing software in Python, Perl, PHP, and Java.
Submitted by marcela.karey on Tue, 02/24/2015 - 14:10
Gramene Webinar February 2015
Tuesday, February 24, 2015 @ 2:00 - 2:30 PM EST
Learn the benefits of using Gramene to accelerate your research goals. Our comparative genomics platform of 40 plant species enables you to:
Explore and visualize functional annotations, expression, and variation in your favorite genes.
List orthologs and paralogs, and view these relationships within phylogenetic trees, whole genome alignments, and synteny maps.
Submitted by Sushma_Naithani on Mon, 02/16/2015 - 12:32
Plant Reactome is a resource for plant metabolic and regulatory pathways built using the Reactome model. At present, Plant Reactome has curated metabolic and regulatory pathways from rice and Arabidopsis, and the orthology-based projections of pathways for additional 33 plant species including several Oryza species, and maize. We are developing tools that can support analysis and visualization of user-defined expression data.
Submitted by marcela.karey on Fri, 01/30/2015 - 16:47
Contributions from Sushma Naithani, Kapeel Chougule and Yinping Jiao.
During the Gramene workshop at PAG 2015, participants were introduced to various resources and tools available at the Gramene database. Powerpoint slides used during these presentations are available in Gramene's Outreach FTP.
Image:
Dr. Joshua Stein demonstrating the Ensembl Gramene Genome Browser
Submitted by marcela.karey on Thu, 01/22/2015 - 14:42
The Plant Reactome webinar has been rescheduled for next Tuesday, February 3rd, 2015 @ 2:00 - 2:30 pm EST
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